Wikipedista:Reo On/Wikiprojekt Biologie
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Some Wikipedians have formed a project to better organize information in articles related to Molecular and Cellular Biology. This page and its subpages contain their suggestions; it is hoped that this project will help to focus the efforts of other Wikipedians. If you would like to help, please inquire on the talk page and see the to-do list there. Also of interest is the Molecular and Cellular Biology Portal associated with this project.
For more information on WikiProjects, please see Wikipedia:WikiProjects and Wikipedia:WikiProject best practices.
Title[editovat | editovat zdroj]
WikiProject on Molecular and Cellular Biology
Scope[editovat | editovat zdroj]
This project aims to improve coverage of molecular and cell biology at wikipedia. A major problem facing biology is organizing the vast amount of information that has been and continues to be collected about genomes, proteomes and cell function. Can wiki tools make a significant contribution to solving this problem? Can wikipedia provide an entry point for the world to the wealth of biological data that is currently hidden in obscure databases and journal articles?
As a first step for this project, we can create a standardized system for presenting information about proteins and genes within wikipedia. A logical place to start is with a system for categorization of proteins, start here: Whole proteome analysis. (see also: EC number, protein nomenclature talk, talk about protein lists, Diskuse:List of proteins and discussion about a specific class of non-enzyme proteins).
For organismal biology evolutionary relatedness of organisms provides a way to categorize all organisms. For proteins, functional categories are probably best and that is what is emphasized at Whole proteome analysis.
We can continue to develop the template for protein information boxes. Protein information boxes can be included in each wikipedia article about a particular protein. Eventually, there should also be an information box about cell types.
Similar WikiProjects[editovat | editovat zdroj]
The list of active projects has sections for both Biology and Health sciences, but the most relevant seems to be the Medicine Project listed at the Biology Portal and the Medicine Portal. Listed within the Medicine Project, there is a Preclinical Medicine Project that is concerned with the kinds of basic science courses that medical students take, however, there is only minimal emphasis on the type of molecular and cell biology issues that are centered on fundamental concerns such as naming and categorizing genes, proteins and cell types.
Wikipedia articles about cellular and molecular biology topics can also be improved by making use of the Wikiversity Biomedical Research Project.
Daughter projects[editovat | editovat zdroj]
Participants[editovat | editovat zdroj]
Alphabetically, please.
| Name | Talk page | Special interests |
|---|---|---|
| AaronM | Talk | I work on (in Wikipedia and the outside world) the cytoskeleton, cilia/flagella, and motor proteins |
| Adenosine | Talk | We need more diagrams, they can convey more information in one image than two volumes of text |
| Alberrosidus | Talk | Membrane structure/function, protein synthesis/signaling |
| Alteripse | Talk | |
| Arcadian | Talk | |
| BerserkerBen | Talk | "Will draw any enzymatic reaction for food": If you feel an article can be improve with a picture of the protein or enzyme reaction/mechanism simply ask. |
| Biohacker | Talk | |
| Blastwizard | Talk | Bioinformatics, Sequence analysis, Protein structure prediction, Metabolism, Cellular processes |
| BorisTM | Talk | Here: Primary - Inter and intra cell signaling, Metabolism, Regulation; Secondary - everything else. Outside this project - Neuroscience. |
| ClockworkSoul | Talk | |
| Daen | Talk | Bioinformatics esp. sequence analysis, cheminformatics |
| David D. | Talk | Epigenetics, biochemistry and development, emphasis on plants |
| Diberri | Talk | template tools |
| GACGGT | Talk | Muscle Biology, Neuromuscular Junction, cell signaling, receptor tyrosine kinases, aging. |
| GAThrawn22 | Talk | Developmental Biology - I would also like to see a wikipedia page for every human protein |
| Goldfinger820 | Talk | RNA interference, RNA molecular biology |
| Hydkat | Talk | Bioinformatics, Sequence analysis, Microarray data analysis, Biodatabases. |
| Inositol | Talk | |
| JBKramer | Talk | Educated non-professional. Not a crank, I promise. |
| Johnalrd | Talk | understanding the Secrets of Life from the nanoscale up |
| Jfdwolff | Talk | |
| JOK | Talk | |
| JWSchmidt | Talk | I admit it; I want a Wikipedia article for every human protein. |
| Kjaergaard | Talk | Biophysical and structural aspects of proteins. |
| LasseFolkersen | Talk | |
| MarcoTolo | Talk | |
| Nibblesnbits | Talk | Enzyme Kinetics, Molecular Biology, Enzyme Inhibition, Drug Discovery |
| Nitramrekcap | Talk | |
| OldakQuill | Talk | |
| Opabinia regalis | Talk | Protein structure and folding, computational biology |
| Peregrine Falcon | Talk | |
| Peter Znamenskiy | Talk | Cell culture and adult stem cells, developmental signalling pathways |
| WikipedianProlific | Talk | I make images, diagrams, cross sections etc. for scientific (biological mostly) wikipedia articles. Please feel free to contact me with a request if you need graphics. My gallery can be seen here. |
| Reo On | Talk | Plant hormonne, plant cell biology (especially topics related to hormonne transport regulation - trafficking, polarity etc ) |
| Rozzychan | Talk | Improve organization of the major biochemical pathways in cell biology by adding templates and links. Improve readability of articles. |
| Staranise | Talk | |
| Stewartadcock | Talk | |
| Tim Vickers | Talk | Enzymes, enzyme kinetics and enzyme inhibition |
| Tycho | Talk | |
| Will381796 | Talk | |
| Willow | Talk | Proteins and other basic biochemistry. |
| Wlad | Talk | Structure-function. Biochemistry of neural development. |
| Zephyris | Talk |
Hierarchy definition[editovat | editovat zdroj]
No classification of this project has been defined.
Goals[editovat | editovat zdroj]
- Create a standard system for providing fundamental information about the proteins and cells that are mentioned and discussed in wikipedia articles.
Projects[editovat | editovat zdroj]
- Public relations/outreach. Ways need to be found to recruit more of the molecular and cell biologists of the world (and their students) to contribute to wikipedia.
- Categorization of articles about proteins. See Whole proteome analysis.
- Organizing and upgrading articles about proteins. See the section on infoboxes, below.
- Requested articles. List new wikipedia pages that are needed:
Tasks[editovat | editovat zdroj]
- Put links to this project in all of the correct places within wikipedia. This includes existing short articles about specific proteins and new stubs (see #Stub templates) for other proteins that are currently only mentioned in other wikipedia articles. Note on finding existing articles about proteins and mentioned proteins: search wikipedia for "protein"; many proteins are mentioned in this sort of context: "the protein X", "a protein called Y" etc. On 8/30/05 I (User:JWSchmidt) went through the first 50 Google hits for "protein" in wikipedia, placing some stub templates (see below) and adding to List of proteins. See also: requested protein articles. Note: many enzymes can be found in the wikipedia enzymes category.
- expand stubs Molecular and cellular biology stubs
It seems a reasonable goal to have each wikipedia article that is about a particular protein include a paragraph that expands on each item in the corresponding protein information box. In other words, the protein information box can serve as a standard-format summary of many of the key topics in the full article. - As protein information boxes are added to pages about specific proteins, be sure to add them to the List of proteins.
- There are also pages dealing with protein structural domains such as Homeobox. Maybe there should be an optional infobox template just for protein structural domains.
- Images. The Homeobox article is a good example of a page that contains an image that is for non-commercial use. The Oxytocin article contains a similar image that may also be a problem. I suggest that all such images that were derived from images that were archived at the PDB website (and were covered by their non-commercial uses disclaimer) be replaced by molecular model images generated by wikipedia users themselves from the raw structural data in the Protein Data Base. The image to the right is an example of such an image. The Protein Data Bank says, "The contents of PDB are in the public domain. Online and printed resources are welcome to include PDB data and images from the Structure Explorer pages, as long as they are not for sale as commercial items themselves, and their corresponding citations are included." (source) Also see: Category:Protein images.
- Protein-containing macromolecular complexes like ribosome should also be organized.
- Make sure that all articles about proteins are placed in the Proteins category or lower level categories that are subcategories of the Proteins category. Additional categories: Whole proteome analysis.
Templates[editovat | editovat zdroj]
The templates for this project may be found on the project's style guidelines page.
Categories[editovat | editovat zdroj]
Protein families[editovat | editovat zdroj]
There needs to be a category for each protein family at the Whole proteome analysis article Also, a navigation bar template (see templates, above).
Cytoskeleton[editovat | editovat zdroj]
This template: {{Šablona:Cytoskeletal Proteins}} marks articles as being in the Cytoskeleton category.
Other categories[editovat | editovat zdroj]
Lists[editovat | editovat zdroj]
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Externí odkazy[editovat | editovat zdroj]
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